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哈佛医学院波士顿儿童医院/麻省总医院博士后,首都儿科研究所医学遗传室研究员,首都医科大学/协和医学院遗传系博士研究生导师,首都医科大学附属首都儿童医学中心遗传门诊出诊专家。
研究方向为儿童神经发育障碍的遗传基础和靶向治疗。利用高通量基因组技术结合传统遗传学技术、常规分子生物学技术,结合患者来源的多潜能干细胞以及分化神经元、基因编辑小鼠模式,研究基因突变致病机理和靶向治疗。2013年开始搭建儿童发育障碍性疾病的遗传诊断平台并成功完成临床转化,该诊断平台每年参加卫生部临床检验中心《遗传病高通量测序检验生信分析室间质评》和《染色体基因组结构异常检测室间质评》都获得合格证书。2018年筹建国内首个按照HPO进行表型化数据描述的儿童神经发育障碍队列,并完成全外显子组测序和基因组CNV检测。2019组建iPSC分化和神经细胞表型研究技术平台,将多种高通量技术(高通量电生理、细胞高内涵、转录组、Seahorse线粒体和细胞代谢组学)和经典神经细胞的检测技术(增殖分化、形态学特点、电生理)整合,以揭示突变神经细胞的早期发育特点。2022年构建脑发育障碍相关罕见病基因治疗的体外评估模型,并验证反义寡核苷酸药物的疗效。
主持或合作主持24个国家、北京市级自然基金或医管局局级项目。参与文章发表73篇,其中SCI文章43篇(第一/通讯作者为25篇,NEJM,2篇AJHG,GIM,Brain),IF最高为96(NEJM),专利2项。
中国妇幼保健协会出生缺陷防治与分子遗传分组副主任委员,中华医学会医学遗传学分会遗传咨询学组副组长,中华医学遗传学杂志》第七届编辑委员会通讯编委,北京医学会遗传分会第九届委员,中国医师协会医学遗传学医师分会儿童遗传病专业委员会委员,中国医学装备协会基因检测分会第一届委员,中国遗传学会行为遗传学分会委员。



在研项目:
1、探索MAZ剂量相关染色质空间构象对16p11.2微缺失神经细胞发育异常的贡献,北京市自然基金面上项目,20万,7262005,2026年01月01日-2028年12月31日,支持
2、儿童重大遗传病发病机制及临床干预策略研究,北京市财政项目,2024年1月1日-2026年12月30日,150万,合作主持
3、MARK2突变通过抑制神经元发育早期的WNT/β-catenin信号通路导致孤独症发生,国家自然基金面上项目,82371868,50万,2024年01月01日-2027年12月31日,主持
近5年发表SCI论著(#第一作者,*通讯作者)
1. ShaofangShangguan#, XinyuanCui #, JuanjuanLi, NiuLi, RongLiu, Xiaoli Chen*. Alu-mediated FANCD2 exonic deletion contributes to Fanconianaemia. Br J Haematol. 2025 Sep;207(3):1076-1084. doi: 10.1111/bjh.70045.
2. Maolei Gong#, Jiayi Li#,Zailong Qin#, Matheus Vernet Machado Bressan Wilke#, Yijun Liu, Qian Li ,Haoran Liu, Chen Liang, Joel A Morales-Rosado, Ana S.A. Cohen, Susan S. Hughes,Bonnie R. Sullivan, Valerie Waddell, Marie-José H. van den Boogaard, Richard H.van Jaarsveld, Ellen van Binsbergen, Koen L van Gassen, Tianyun Wang, Susan M.Hiatt, Michelle D. Amaral, Whitley V. Kelley, Jianbo Zhao, Weixing Feng,Changhong Ren, Yazhen Yu, Nicole J Boczek, Matthew J. Ferber, Carrie Lahner,Sherr Elliott, Yiyan Ruan, Mignot Cyril, Boris Keren, Hua Xie, Xiaoyan Wang,Bernt Popp, Christiane Zweier, Juliette Piard, Christine Coubes, Frederic TranMau-Them, Hana Safraou, A. Micheil Innes, Julie Gauthier, Jacques Michaud,Daniel C. Koboldt, Odent Sylvie, Marjolaine Willems, Wen-Hann Tan, BenjaminCogne, Claudine Rieubland, Dominique Braun, Scott Douglas McLean, KonradPlatzer, Pia Zacher, Henry Oppermann, Lucie Evenepoel, Pierre Blanc, Laïla ElKhattabi, Neshatul Haque, Nikita R. Dsouza, Michael T. Zimmermann, RaulUrrutia, Eric W Klee, Yiping Shen, Hongzhen Du, Chang-Mei Liu* and Xiaoli Chen*. MARK2 variants causeautism spectrum disorder viathe downregulation of WNT/β-catenin signalingpathway, Am J Hum Genet ., 2024 Oct 11:S0002-9297(24)00366-5. doi:10.1016/j.ajhg.2024.09.006. Online ahead of print.( JCR Q1, IF=8.1)
3. Shaofang Shangguan#, XueyuanZhang#, Yangyang Ge, Ye Han, Ling Xiao, Yu Zhang, Hua Xie, Xiaoli Chen*, Xiaoyan Wang*. Confirming the enzymatic activity andneurodevelopmental trajectory of PYCR1 mutation in one child withautosomal-recessive cutis laxa type 2. MolecularGenetics and Genomics. 2024 Aug 22;299(1):81. doi:10.1007/s00438-024-02173-y. (JCR Q3, IF=2.3)
4. Ye Han#, Yangyang Ge#, HaoranLiu, Liying Liu, Lina Xie, Xiaoli Chen*,Qian Chen*. A novel compound heterozygous mutation of UFC1 in a patient withneurodevelopmental disorder. Genes & Genomics, 2024Sep;46(9):1037-1043. doi: 10.1007/s13258-024-01543-5. (JCR Q3, IF=1.6)
5. QingmingWang#, Ye Han#, Xinlong Zhou, ShuangXi Cheng, Xin Wang, Xiaoli Chen*,Haiming Yuan*. RNASEH2C c.194G>A is a Chinese-specific founder mutation inthree unrelated patients with Aicardi-Goutières syndrome 3. ClinGenet. 2023 Aug;104(2):259-265. doi: 10.1111/cge.14343. Epub 2023 Apr24.IF=4.2, Q2
6. HuiYin#, Hua Xie#, Jizhen Zou, Xue Ye, Ying Liu, CaiHe, Shaofang Shangguan, Haoran Liu, Xiaoli Chen*, Xiaobo Chen*. A mosaickaryotype of 45,X/46,X,psu idic(Y)(q12) in a ten-year-old boy: integratinghigh-throughput sequencing with cytogenetic technique for precise diagnosis andgenetic counselling. BMC Pediatr. 2023 Mar 4;23(1):104.doi: 10.1186/s12887-023-03872-y. IF= 2.567,Q3
7. FangLiu, Chen Liang, Zhengchang Li, Sen Zhao, Haiming Yuan, Ruen Yao, Zailong Qin,Shaofang Shangguan, Shujie Zhang, Li-Ping Zou, Qian Chen, Zhijie Gao, SuiwenWen, Jing Peng, Fei Yin, Fei Chen, Xiaoxia Qiu, Jingsi Luo, Yingjun Xie, DianLu, Yu Zhang, Hua Xie, Guozhuang Li, Terry Jianguo Zhang, Pengfei Luan,Hongying Wang, Xiaodai Cui, Hailiang Huang, Ruize Liu, Xiaofang Sun, Chao Chen,Nan Wu, Jian Wang, Chunyu Liu, Yiping Shen, James F. Gusella, Xiaoli Chen*.Haplotype-specific MAPK3 expression in 16p11.2 deletion contributes to variableneurodevelopment. Brain,2023 Aug 1;146(8):3347-3363. doi: 10.1093/brain/awad071.. IF=15, Q1.
8. HuaXie#, Hui Yin#, Xue Ye, Ying Liu, Na Liu, Yu Zhang, Xiaoli Chen*, XiaoboChen*, Detection of small CYP11B1 deletions and one founder chimericCYP11B2/CYP11B1 gene in 11β-hydroxylase deficiency. Front. Endocrinol., 2022May 24;13:882863. doi: 10.3389/fendo.2022.882863. IF=6.05 Q1,
9. YuTian#, Hua Xie#, Shenghai Yang, Shaofang Shangguan, Jianhong Wang, Chunhua Jin,Yu Zhang, Xiaodai Cui, Yanyu Lyu, Xiaoli Chen*, Lin Wang*. PossibleCatch-Up Developmental Trajectories for Children with Mild Developmental DelayCaused by NAA15 Pathogenic Variants. Genes (Basel).2022;13(3):536. doi:10.3390/genes13030536.IF=4.14, Q2
10. LiyingLiu#, Fang Liu#, Qiuhong Wang, Hua Xie, Zhengchang Li, Qian Lu, Yangyang Wang,Mengna Zhang, Yu Zhang, Jonathan Picker, Xiaodai Cui, Liping Zou, XiaoliChen*. Confirming the contribution and genetic spectrum of de novo mutationin infantile spasms: Evidence from a Chinese cohort. Mol Genet Genomic Med. 2021Jun;9(6):e1689. doi: 10.1002/mgg3.1689. Epub 2021 May 5. IF=2.87, Q3
11. HaimingYuan#, Shaofang Shangguan#, ZhengchangLi#, Jingsi Luo#, Jiasun Su#, Ruen Yao, Shun Zhang, Chen Liang, Qian Chen, Zhijie Gao, Yanli Zhu, Shujie Zhang, WeiLi, Weiliang Lu, Yu Zhang, Hua Xie, Fang Liu,Qingming Wang, Yangyang Lin, Liying Liu, XiumingWang, Liyang Liang, Jianmin Zhong, Haibo Li, Haiyan Qiu, Huifeng Zhang, MeiYan, Maimaiti Mireguli, Yanhui Liu, Dan Zhang, Hongying Wang, Haitao Lv, BoboXie, Chunrong Gui, Xiaodai Cui, Liping Zou, Jian Wang, James F. Gusella, YipingShen*, Xiaoli Chen*. CNV profiles of Chinese pediatric patients withdevelopmental disorders. Genet Med. 2021 Apr;23(4):669-678.doi: 10.1038/s41436-020-01048-y. Epub 2021 Jan 5. IF=8.9, Q1
2014年入选北京市百千万工程领军人才,2014年入选北京市卫生系统215高层次人才“学术骨干”称号,2015年入选北京市高创人才计划领军人才(G01050004)。

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